I ran out of space on our cluster while running a refinement and cisTEM crashed, preventing me from opening the database file. After clearing out some space, I have been able to open the database file but I can no longer run jobs--they look like they're running but they're really just stuck in the first iteration for days. I also can't export a refinement package. It gets exported and visually looks correct (relion format) but Relion tells me that it doesnt exist when I try to import it. The only thing I have been able to do is sharpen and save a map from an old refinement.
Does anyone have and idea of what may have happened and if there's any hope for fixing it?