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Gtk-CRITICAL error

julianamartinez

Gtk-CRITICAL error

Hi,

I'm getting an error when lauching cisTEM or when trying to create a new refinement package.  The error is:

 

Gtk-CRITICAL **: IA__gtk_tree_row_reference_new_proxy: assertion 'path->depth > 0' failed

 

Does anyone have any sugestions?

 

Thanks,

 

Juliana

Mon, 07/08/2019 - 16:28

timgrant

Hi Juliana,

This GTK error is probably not a problem - does cisTEM not launch?

Tim

Mon, 07/08/2019 - 18:11

julianamartinez

Hi Tim,

 

Thanks for your help!  cisTEM either doesn't launch or it crashes when attempet to perform an action.

 

Juliana

Mon, 07/08/2019 - 18:16

timgrant

Hi Juliana,

Is this the downloaded binaries, or did you compile yourself?  What machine is this running on?

Tim

Mon, 07/08/2019 - 18:22

julianamartinez

I think it is the downloaded binaries, I'm not compiling anything myself. I'm running cisTEM on our cluster at the NIH (biowulf).

 

Juliana

Mon, 07/08/2019 - 18:39

timgrant

Hi Juliana,

That has worked before i believe?  Are you running the GUI on the head node?

Can you tell me exactly when it crashes? Does it load the project when you open a project?  Is there anything else printed in the terminal?

Tim

Tue, 07/09/2019 - 00:34

julianamartinez

Hi Tim, 

 

Yes I have run cisTEM in aour cluster multiple times, and I use an interactive session to run it.  As I mentiones before if crashes either when try to launch it or after loading the project and I tried to do an action, specifically I was trying to create a refinement package or run 2D classification.

 

this is what it is in the terminal:

Thanks,

 

Juliana

Tue, 07/09/2019 - 03:05

timgrant

Hi Juliana,

I can't see anything pasted after "this is what is in the terminal"?

Is it possible you have run out of disk space?

Tim

Tue, 07/09/2019 - 13:38

julianamartinez

Hi Tim,

 

Sorry about that, it says:

 

 

cisTEM

 

(cisTEM:6777): Gtk-CRITICAL **: IA__gtk_tree_row_reference_new_proxy: assertion 'path->depth > 0' failed

 

(cisTEM:6777): Gtk-CRITICAL **: IA__gtk_tree_row_reference_new_proxy: assertion 'path->depth > 0' failed

Aborted

No, we have plenty space.

 

Thanks,

 

Juliana

Tue, 07/09/2019 - 19:50

timgrant

Hi Juliana,

Aborted means it is crashing for some reason.  Does this happen with new projects, or just this particular project?

Tim

Tue, 07/09/2019 - 19:53

julianamartinez

Hi Tim,

Just in one project,  I have created a new project for this data set and it is working but I had to redo everything again.

 

Thanks,

 

Juliana

Tue, 07/09/2019 - 21:12

timgrant

Hi Juliana,

I am sorry you had to do this.  We can try and get to the bottom of it if you want - I can send you a debug version which you could run to try and solve the problem?

If you would rather just leave it, I also can understand that.

Tim