FSc curve in xml format

Dear All,

Is there anyway to write the FSC output in xml format.

Or any other third party software that can convert the text file output from Cistem to xml format.

Thank you.

Jobi

I think the following bash

I think the following bash script will do the conversion. You need to edit out everything but the FSC you want, and also remove all the comments from the file, save this as a new file, then give it as the first argument to the script, with the desired output.xml as the output. This will use the partFSC column :-

-------------------------------
#!/bin/bash
readarray all_lines < $1
one=1
echo '<fsc title="" xaxis="Resolution (A-1)" yaxis="Correlation Coefficient">' > $2
echo ' <coordinate>' >> $2
echo '    <x>0.0</x>' >> $2
echo '    <y>1.0</y>' >> $2
echo ' </coordinate>' >> $2
## now loop through the above array
for i in "${all_lines[@]}"
do
   resolution=`echo $i | awk '{print $2}'`
   spatial_freq=`calc -p 1/$resolution | cut -d'~' -f2`
   fsc=`echo $i | awk '{print $5}'`
echo ' <coordinate>' >> $2
echo "    <x>$spatial_freq</x>" >> $2
echo "    <y>$fsc</y>" >> $2
echo " </coordinate>" >> $2
done
echo '</fsc>' >> $2

xml format

Dear Tim,

The output is given below. It is not giving a proper output. Can you please check

I am using the following command " script input.txt output.xml"

FSc curve in xml format