Writing out/accessing TM results in bulk

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tlaughlin
Writing out/accessing TM results in bulk

Hi folks,

Is there a way to write out the template matching metadata for all images against a given template either through the GUI, command-line or interfacing with the .db some how?

I have run template matching with a number of templates and am hoping there is a way to gain access to all of the SNR scores without saving files individually from the GUI in the TM Results tab for every template and micrograph.

Happy to do this with bash or python, but I would greatly benefit from some pointers to get started.

Thank you for your help!

jojoelfe
Hi,

Hi,

 

That's not something we have in the main branch yet. If you are familiar with python, here is a function that writes a star file:

 

https://github.com/jojoelfe/pycistem/blob/main/pycistem%2Fdatabase%2F__i...

tlaughlin
Success! Thank you so much!

Success!

Thank you so much!

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