I am writing as a comp. support scientist of an HPC team. One of our users tries to employ cisTEM on our system.
Your docs state that, in order to use cisTEM under SLURM one use a manager and job command. Here, it is unclear what a "manager command" is at all. To use interactive jobs, we recommend
$ salloc -A <account> -p <partition> <further resource allocations>
$ srun cisTEM
or alternatively launch cisTEM without any further ado on the head node, if the required task is not resource hungry.
In order to launch a batch job the required non-GUI command is unclear. Is there a way to retrieve that from within cisTEM? Or somewhere burried in the docs?
Perhaps this sounds naive, yet I am a non-user and trying to document for our cluster. Any pointer is appreciated.
Thanks a lot in advance.