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Socket Server is now NULL in generate 3D and refine 3D jobs

Nitesh

Socket Server is now NULL in generate 3D and refine 3D jobs

Dear All,

I have used cisTEM on particle stacks from relion to run local refinment jobs. Which run nicley. later, I wanted to generate half maps in generate3D job on my final cisTEM Refine3D map.  I could not able to  generate the half maps. I am getting following error in cisTEM window

Error: A slave has disconnected before all jobs are finished."

There terminal shows following.

"Socket Server is now NULL"

Now I can not run any kind job from this database . I am trying to run any job I am geteeing  "Socket Server is now NULL error".

I am afraid that my database is corrrupted. Is there any way I can resolve this issue ?

Thankyou 

Nitesh

 

Tue, 02/23/2021 - 16:04

timgrant

Hi Nitesh,

Is this the development version of cisTEM?  socket server is now NULL is not necessarily an error - it should go to NULL at the end of the job.

The slave disconnect means something crashed.

Are you able to open your database right now?  At what point does it crash?  Did you create this project with the same version you are currently running?

Tim

Tue, 02/23/2021 - 22:31

Nitesh

Hi Tim,

Thanks for your prompt reply

I figure out the issue. I move the position of relion particles stack in different directory after importing them as refinement package in cisTEM.

This caused the issue. 

 

Best

Nitesh