Published on cisTEM (https://cistem.org)

Import format

4 posts / 0 new

Fri, 03/30/2018 - 09:46

sstagg

Import format

Hey y'all,

Would you mind posting the format for the Frealign parameter file that one would import for a Refinement Asset? I realize that cisTEM accepts multiple different frealign formats, but would you mind posting the most recent form that includes phase shift etc? If I could be so bold, I suggest you put that in the FAQ, so it will be easy to find when I forget that I posted this question.

Thanks,

Scott

Sat, 03/31/2018 - 22:17

timgrant

Hi Scott,

There is one row per particle, the columns are as follows :-

positon_in_stack, psi, theta, phi, x_shift, y_shift, magnification (not used), image_is_active(<0 means no), defocus_1, defocus_2, astigmatism_angle, phase_shift, occupancy, logP, sigma, score, score_change

I'll try and get this formatted nicely in a FAQ soon.

Thanks!

Tim

Sun, 04/01/2018 - 11:09

niko

I have added an FAQ with the

I have added an FAQ with the info.

Mon, 04/02/2018 - 11:39

sstagg

Thanks!

Source URL:https://cistem.org/import-format