I'm fairly new to cisTEM and have a quick question. I processed a structure in relion and wanted to run a final refinement run in cisTEM to compare the results. For this however, I need to (re)align the symmetry using align_symmetry. My question now is; how do I pass on the number of CPUs I'd like to use to the command line command of align_symmetry (on a local desktop)?
I tried 'mpirun -N 17 align_symmetry' but it exits straight away because it doesn't have the information needed (input file, symmetry, etc..).
Any help would be greatly appreciated.