I have noticed that the options I specify for Manual Refinement (particularly under the "Reconstruction" and "Masking' subsections) are not what appears after the job is done and I check the "Show Job Details" in the Results section (see attached). Which set of settings were actually used under the hood?
As an aside, I notice that the value of the "Reconstruction ID" looks like some integer overflow is happening somewhere? It no longer changes between rounds of refinement, and I certainly haven't initiated quite that many jobs.
I'm hoping my database isn't corrupted! I had to do quite a bit of manual editing of the picks to get things right, which I would prefer not to have to redo. If so, is there a fix less drastic than backing up the appropriate tables of interest from the sqlite database and starting from scratch?
Hi,
Your database is not corrupt. In the released version there is a bug in how this information is read in - it will be fixed in the next release. If you need access to this information in the mean time, you can get it through direct database access - as described in this forum post :-
https://cistem.org/refine-job-details-not-correct
Thanks!
Tim
P.s it never hurts to backup your database every so often, you just need to copy the .db file when the database is not open.
Oh shoot, I thought I had done my due diligence in going through this forum's posts, apologies. The solution in that previous thread works, now that all my jobs have finished and I can go through the database manually.
Thanks for your quick response, Tim, as well as all the hard work put into cisTEM -- it's a great piece of software!