Launching cisTEM jobs from command line - Exposure filtering

Hi,

I'am using Unblur to 'dose filter' tilted-series. I would like to do it automatically from the command line, by creating a simple script.

Is it possible? Does cisTEM write the command line for all jobs ?

Many thanks

Eugenio

Hi Eugenio,

You can run unblur from the command line, and so you can script it. if you go to the cisTEM bin directory and run ./unblur it will ask you for the inputs as a series of questions. You can script this by piping input to the executable.

Will that do what you want?

Cheers,

Tim

I think so

Hi Tim,

Many thanks. Yes, I'll figure out how to do it.

There is no way of setting -input -output -pixel_size -bin -exposure_filer ... ?

Cheers

Eugenio

Exposure filter

I meant -exposure_filter

Actually, what I would like to do is to compare different exposure filtering ways.

Thanks again

Eugenio

Hi Eugenio,

You could write a bash script that accepts input, ouput pixel size etc as input and runs unblur with the inputs you need.

Cheers,

Tim

Yes, that's what I was

Yes, that's what I was thinking about.

Many thanks again Tim.

Cheers

Eugenio