I was running manual refine in cisTEM and the GUI crashed. When I restarted, I get the following error message and the GUI closes again.
ASSERT INFO:
/home/grigoriefflab/compiled/wxWidgets3_static/include/wx-3.0/wx/dynarray.h(838): assert "uiIndex < m_nCount" failed in Item().
BACKTRACE:
[1] g_main_context_dispatch
ASSERT INFO:
/home/grigoriefflab/compiled/wxWidgets3_static/include/wx-3.0/wx/dynarray.h(838): assert "uiIndex < m_nCount" failed in Item().
BACKTRACE:
[1] g_main_context_dispatch
[2] g_main_loop_run
[3] gtk_main
[4] __libc_start_main
[2] g_main_loop_run
[3] gtk_main
[4] __libc_start_main
Any help is appreciated. Thanks.
Hi,
Can you see if you are affected by the bug described here :-
https://cistem.org/database-issue-after-cistem-crash
If this does not fix the issue, please let me know.
Tim
Thank you but No, it does not help.
When I type
select * from particle_position_group_list;
It does not produce any list.
The above error occurs when I click on the results section.
Hmm, this is strange.
Have you moved the project, or deleted any files from the project directory?
Tim
Hi,
I have also been having almost the same error message. On our cluster, it is unfortunately common for one of the worker processes to no longer be able to communicate for some reason (usually due to the node going down). At this point, I usually Terminate Job and restart. I receive this error when, within the Results Section, I click on the specific Input Parameters it last finished before it died. This does not happen every time. As long as I never click on those specific parameters, everything seems to work okay. Other jobs can be ran, etc.
I have not moved the project, or manually deleted any files from the project directory.
Not sure if this helps identify any issues, but thought I would share.
ASSERT INFO:
/home/grigoriefflab/compiled/wxWidgets3_static/include/wx-3.0/wx/dynarray.h(838): assert "uiIndex < m_nCount" failed in Item().
BACKTRACE:
[1] g_main_context_dispatch
[2] g_main_loop_run
[3] gtk_main
[4] __libc_start_main
Thanks.
Paul Thomas