C Refine3D run date and time: 2019-11-20 11:00:46 C Input particle images: stack.mrc C Input Frealign parameter filename: my_refined_parameters.par C Input reconstruction: volume_135_1.mrc C Output reconstruction 1: my_reconstruction_1.mrc C Output reconstruction 2: my_reconstruction_2.mrc C Output filtered reconstruction: my_filtered_reconstruction.mrc C Output resolution statistics: my_statistics.txt C Particle symmetry: C3 C First particle to include: 1 C Last particle to include: 58984 C Pixel size of images (A): 1.060000 C Beam energy (keV): 300.000000 C Spherical aberration (mm): 2.700000 C Amplitude contrast: 0.070000 C Beam tilt in x (mrad): -0.831000 C Beam tilt in y (mrad): -1.491100 C Particle shift in x (A): 0.186900 C Particle shift in y (A): 0.318800 C Molecular mass of particle (kDa): 350.000000 C Inner mask radius (A): 0.000000 C Outer mask radius (A): 100.000000 C Rec. resolution limit (A): 2.120000 C Ref. resolution limit (A): 2.120000 C Particle weighting factor (A^2): 2.000000 C Score threshold: 4.658061 C Smoothing factor: 1.000000 C Padding factor: 1.000000 C Normalize particles: No C Adjust scores for defocus dependence: Yes C Invert particle contrast: No C Exclude images with blank edges: No C Crop particle images: No C FSC with even/odd particles: Yes C Apply likelihood blurring: No C Threshold input reconstruction: Yes C Correct Ewald sphere curvature: 0 C Dump intermediate arrays: No C Output dump filename for odd particles: dump_file_1.dat C Output dump filename for even particles: dump_file_2.dat C C SHELL RESOLUTION RING_RADIUS FSC Part_FSC Part_SSNR^0.5 Rec_SSNR^0.5 2.00000 265.00000 0.00400 0.99999 1.00000 20.35536 430.83304 3.00000 132.50000 0.00800 0.99999 1.00000 13.65767 416.12991 4.00000 88.33333 0.01200 0.99994 0.99999 6.07888 352.67532 5.00000 66.25000 0.01600 0.99985 0.99998 3.02587 276.85181 6.00000 53.00000 0.02000 0.99971 0.99997 1.80858 222.17062 7.00000 44.16666 0.02400 0.99971 0.99997 1.53528 220.39450 8.00000 37.85714 0.02800 0.99948 0.99994 1.04876 175.14572 9.00000 33.12500 0.03200 0.99927 0.99992 0.85582 150.88388 10.00000 29.44444 0.03600 0.99909 0.99990 0.79520 136.19519 11.00000 26.50000 0.04000 0.99855 0.99984 0.72387 109.81972 12.00000 24.09091 0.04400 0.99711 0.99969 0.63940 79.07369 13.00000 22.08333 0.04800 0.99279 0.99922 0.51715 50.42015 14.00000 20.38461 0.05200 0.98828 0.99873 0.42562 39.54678 15.00000 18.92857 0.05600 0.99035 0.99896 0.42119 43.59525 16.00000 17.66667 0.06000 0.99091 0.99902 0.41409 44.91336 17.00000 16.56250 0.06400 0.98989 0.99891 0.41384 42.59168 18.00000 15.58823 0.06800 0.98676 0.99857 0.38296 37.18602 19.00000 14.72222 0.07200 0.98374 0.99823 0.34125 33.53186 20.00000 13.94737 0.07600 0.98321 0.99818 0.33694 32.98775 21.00000 13.25000 0.08000 0.98344 0.99820 0.36077 33.22435 22.00000 12.61905 0.08400 0.98173 0.99801 0.35817 31.61049 23.00000 12.04545 0.08800 0.97715 0.99750 0.32306 28.21105 24.00000 11.52174 0.09200 0.97080 0.99679 0.29303 24.88842 25.00000 11.04167 0.09600 0.96665 0.99632 0.27401 23.24231 26.00000 10.60000 0.10000 0.96255 0.99585 0.25912 21.88917 27.00000 10.19231 0.10400 0.95611 0.99511 0.25191 20.15699 28.00000 9.81481 0.10800 0.95243 0.99468 0.24591 19.32555 29.00000 9.46428 0.11200 0.94682 0.99402 0.22976 18.22521 30.00000 9.13793 0.11600 0.93360 0.99245 0.21070 16.19969 31.00000 8.83333 0.12000 0.92054 0.99085 0.19483 14.70635 32.00000 8.54839 0.12400 0.90972 0.98949 0.18338 13.71607 33.00000 8.28125 0.12800 0.88966 0.98690 0.16801 12.27049 34.00000 8.03030 0.13200 0.86300 0.98330 0.14946 10.84692 35.00000 7.79412 0.13600 0.83643 0.97950 0.13716 9.77325 36.00000 7.57143 0.14000 0.80725 0.97508 0.12591 8.84512 37.00000 7.36111 0.14400 0.77575 0.96999 0.11596 8.03902 38.00000 7.16216 0.14800 0.74890 0.96536 0.10905 7.46476 39.00000 6.97368 0.15200 0.71616 0.95931 0.10142 6.86599 40.00000 6.79487 0.15600 0.68697 0.95350 0.09605 6.40346 41.00000 6.62500 0.16000 0.65816 0.94734 0.09123 5.99792 42.00000 6.46341 0.16400 0.63191 0.94132 0.08662 5.66367 43.00000 6.30952 0.16800 0.60023 0.93347 0.08233 5.29675 44.00000 6.16279 0.17200 0.55835 0.92195 0.07637 4.86037 45.00000 6.02273 0.17600 0.52341 0.91121 0.07198 4.53011 46.00000 5.88889 0.18000 0.48683 0.89863 0.06749 4.21042 47.00000 5.76087 0.18400 0.45691 0.88715 0.06436 3.96504 48.00000 5.63830 0.18800 0.43130 0.87634 0.06172 3.76455 49.00000 5.52083 0.19200 0.40686 0.86504 0.05920 3.58022 50.00000 5.40816 0.19600 0.37560 0.84896 0.05610 3.35274 51.00000 5.30000 0.20000 0.34014 0.82808 0.05237 3.10366 52.00000 5.19608 0.20400 0.30052 0.80058 0.04827 2.83350 53.00000 5.09615 0.20800 0.24922 0.75620 0.04287 2.49065 54.00000 5.00000 0.21200 0.20269 0.70374 0.03781 2.17963 55.00000 4.90741 0.21600 0.16949 0.65600 0.03419 1.95292 56.00000 4.81818 0.22000 0.14605 0.61511 0.03159 1.78778 57.00000 4.73214 0.22400 0.12290 0.56698 0.02883 1.61823 58.00000 4.64912 0.22800 0.10057 0.51096 0.02596 1.44556 59.00000 4.56896 0.23200 0.08433 0.46253 0.02376 1.31191 60.00000 4.49153 0.23600 0.07267 0.42271 0.02210 1.21015 61.00000 4.41667 0.24000 0.06483 0.39314 0.02094 1.13825 62.00000 4.34426 0.24400 0.06088 0.37724 0.02042 1.10067 63.00000 4.27419 0.24800 0.05859 0.36772 0.02016 1.07849 64.00000 4.20635 0.25200 0.05193 0.33855 0.01905 1.01176 65.00000 4.14062 0.25600 0.04638 0.31246 0.01808 0.95336 66.00000 4.07692 0.26000 0.04260 0.29368 0.01742 0.91190 67.00000 4.01515 0.26400 0.03850 0.27227 0.01665 0.86501 68.00000 3.95522 0.26800 0.03498 0.25303 0.01594 0.82308 69.00000 3.89706 0.27200 0.03160 0.23365 0.01524 0.78087 70.00000 3.84058 0.27600 0.02998 0.22410 0.01493 0.76003 71.00000 3.78571 0.28000 0.02955 0.22153 0.01492 0.75442 72.00000 3.73239 0.28400 0.03054 0.22739 0.01526 0.76721 73.00000 3.68056 0.28800 0.03299 0.24172 0.01599 0.79846 74.00000 3.63014 0.29200 0.03163 0.23382 0.01576 0.78124 75.00000 3.58108 0.29600 0.03055 0.22747 0.01557 0.76739 76.00000 3.53333 0.30000 0.03182 0.23493 0.01600 0.78367 77.00000 3.48684 0.30400 0.03192 0.23552 0.01612 0.78494 78.00000 3.44156 0.30800 0.03189 0.23539 0.01622 0.78466 79.00000 3.39744 0.31200 0.03102 0.23028 0.01607 0.77352 80.00000 3.35443 0.31600 0.03041 0.22666 0.01600 0.76562 81.00000 3.31250 0.32000 0.02935 0.22028 0.01580 0.75166 82.00000 3.27160 0.32400 0.02803 0.21228 0.01552 0.73413 83.00000 3.23171 0.32800 0.02731 0.20780 0.01539 0.72430 84.00000 3.19277 0.33200 0.02353 0.18381 0.01435 0.67111 85.00000 3.15476 0.33600 0.02005 0.16052 0.01329 0.61840 86.00000 3.11765 0.34000 0.01796 0.14595 0.01263 0.58461 87.00000 3.08140 0.34400 0.01509 0.12524 0.01162 0.53511 88.00000 3.04598 0.34800 0.01424 0.11896 0.01134 0.51966 89.00000 3.01136 0.35200 0.01328 0.11168 0.01100 0.50144 90.00000 2.97753 0.35600 0.01184 0.10067 0.01043 0.47315 91.00000 2.94444 0.36000 0.01057 0.09079 0.00990 0.44689 92.00000 2.91209 0.36400 0.00991 0.08555 0.00963 0.43256 93.00000 2.88043 0.36800 0.01188 0.10097 0.01061 0.47394 94.00000 2.84946 0.37200 0.01291 0.10888 0.01111 0.49433 95.00000 2.81915 0.37600 0.01233 0.10448 0.01091 0.48306 96.00000 2.78947 0.38000 0.01157 0.09863 0.01062 0.46781 97.00000 2.76042 0.38400 0.01110 0.09490 0.01044 0.45793 98.00000 2.73196 0.38800 0.01197 0.10168 0.01089 0.47580 99.00000 2.70408 0.39200 0.01236 0.10471 0.01112 0.48364 100.00000 2.67677 0.39600 0.01154 0.09839 0.01079 0.46717 101.00000 2.65000 0.40000 0.00984 0.08495 0.01000 0.43089 102.00000 2.62376 0.40400 0.00942 0.08158 0.00982 0.42149 103.00000 2.59804 0.40800 0.00987 0.08524 0.01010 0.43171 104.00000 2.57282 0.41200 0.00991 0.08555 0.01016 0.43256 105.00000 2.54808 0.41600 0.01088 0.09323 0.01070 0.45346 106.00000 2.52381 0.42000 0.01073 0.09204 0.01066 0.45026 107.00000 2.50000 0.42400 0.00936 0.08113 0.00999 0.42022 108.00000 2.47664 0.42800 0.00876 0.07624 0.00970 0.40628 109.00000 2.45370 0.43200 0.00869 0.07569 0.00970 0.40470 110.00000 2.43119 0.43600 0.00877 0.07636 0.00978 0.40664 111.00000 2.40909 0.44000 0.00762 0.06697 0.00915 0.37890 112.00000 2.38739 0.44400 0.00589 0.05246 0.00807 0.33274 113.00000 2.36607 0.44800 0.00441 0.03976 0.00700 0.28778 114.00000 2.34513 0.45200 0.00320 0.02911 0.00598 0.24489 115.00000 2.32456 0.45600 0.00360 0.03266 0.00637 0.25984 116.00000 2.30435 0.46000 0.00438 0.03945 0.00705 0.28659 117.00000 2.28448 0.46400 0.00374 0.03387 0.00653 0.26480 118.00000 2.26496 0.46800 0.00274 0.02503 0.00561 0.22661 119.00000 2.24576 0.47200 0.00247 0.02262 0.00535 0.21515 120.00000 2.22689 0.47600 0.00276 0.02521 0.00567 0.22741 121.00000 2.20833 0.48000 0.00202 0.01856 0.00486 0.19450 122.00000 2.19008 0.48400 -0.00023 -0.00214 0.00164 0.00000 123.00000 2.17213 0.48800 -0.00154 -0.01423 0.00428 0.00000 124.00000 2.15447 0.49200 -0.00319 -0.02906 0.00618 0.00000 125.00000 2.13710 0.49600 -0.00435 -0.03926 0.00729 0.00000 126.00000 2.12000 0.50000 -0.00437 -0.03940 0.00755 0.00000